The genetic evidence from Putuni is limited but evocative: one sampled individual (dated 675–831 CE) yielded mitochondrial haplogroup C1c. Haplogroup C1c is part of a Native American maternal lineage cluster found across the Americas and has been observed in Andean contexts; its presence at Putuni is consistent with longstanding maternal continuity on the highlands.
Because no Y‑chromosome data are reported for this individual and only a single mitochondrial genome is available, interpretations must remain cautious. A single mtDNA match cannot resolve population-level structure, migration directionality, or interaction with lowland groups. Nevertheless, this maternal marker supports archaeological models that emphasize local continuity among Tiwanaku-associated populations while leaving open the possibility of gene flow from neighboring regions.
Comparative ancient DNA from other Tiwanaku and adjacent populations has, in broader studies, revealed mixtures of highland Andean ancestries with periodic contributions from lower-elevation groups. The Putuni mtDNA result is compatible with such a picture but, given the sample count of one, should be treated as a preliminary data point. Future sampling at Putuni and surrounding sites would be needed to test hypotheses about maternal lineage diversity, sex-biased migration, and kinship patterns within Tiwanaku communities.