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mtDNA Haplogroup • Maternal Lineage

B

mtDNA Haplogroup B

~50,000 years ago
East / Southeast Asia
4 subclades
75 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup B

Origins and Evolution

Haplogroup B is an mtDNA lineage derived from the macro-haplogroup R and is estimated to have arisen in East to Southeast Asia during the Upper Paleolithic (roughly around 40–60 thousand years ago). After its origin, B diversified into multiple subclades which expanded locally within continental East Asia and more broadly into Island Southeast Asia and Oceania. Several of its descendant lineages are associated with major Holocene demographic movements, including the Austronesian expansion and the peopling of the Americas.

Subclades

Haplogroup B is subdivided into a number of well-documented subclades (commonly referenced as B4, B5 and their downstream branches). Notable subclades include the Polynesian-related B4a1a1 (often referred to as the "Polynesian motif") which is frequent in Island Southeast Asia and across Polynesia, and the Native American branch commonly labeled B2, a distinct American subclade derived from Asian B lineages. Different subclades show distinct geographic and temporal signatures reflecting bottlenecks, founder effects, and later demographic expansions.

Geographical Distribution

Today, haplogroup B and its subclades are found at appreciable frequencies across East Asia and Southeast Asia, are prominent in many Austronesian-speaking populations (including Taiwanese indigenous groups, Filipinos, and island Melanesians/Polynesians), and occur throughout the Pacific where the Polynesian motif is common. A derived American clade (B2) is one of the primary maternal lineages of indigenous peoples across Central and South America and is present in many North American indigenous groups at varying frequencies, reflecting the initial Late Pleistocene/Early Holocene peopling of the Americas.

Historical and Cultural Significance

Haplogroup B has been linked in population genetic studies to several major prehistoric movements. The distribution of certain B subclades strongly tracks the Austronesian expansion out of Taiwan and through Island Southeast Asia into Remote Oceania (and the associated Lapita cultural complex). The presence of a distinct B-derived lineage (B2) in Native Americans provides genetic evidence for an Asian origin of at least part of the founding maternal pool of the Americas. In addition, the Polynesian motif within B has been used as a genetic marker for long-distance voyaging and island colonization in the Pacific.

Conclusion

mtDNA haplogroup B is a geographically broad and temporally deep maternal lineage originating in East/Southeast Asia during the Upper Paleolithic. Its diversity and distribution capture key episodes of human prehistory in Asia, Island Southeast Asia, Oceania, and the Americas, making it a focal haplogroup for studies of migration, island colonization, and the initial peopling of the New World.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 B Current ~50,000 years ago 🦴 Paleolithic 50,000 years 4 1,196 75
Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

East / Southeast Asia

Modern Distribution

The populations where mtDNA haplogroup B is found include:

  1. Han Chinese and other East Asian populations (China, Korea, Japan)
  2. Southeast Asian groups (Vietnamese, Thai, Malay peoples, Filipino)
  3. Indigenous Taiwanese (Austronesian-speaking groups)
  4. Austronesian-speaking Pacific Islanders (Polynesians, Micronesians)
  5. Melanesian populations (in parts of Island Melanesia)
  6. Indigenous peoples of the Americas (especially Central and South America — Native American B2 lineage)
  7. Indigenous North American groups at lower frequencies
  8. Coastal and island populations involved in prehistoric maritime dispersals
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~70k years ago

Out of Africa

Major migration of modern humans out of Africa

~50k years ago

Upper Paleolithic

Advanced tool-making, art, and cultural explosion

~50k years ago

Haplogroup B

Your mtDNA haplogroup emerged in East / Southeast Asia

East / Southeast Asia
~20k years ago

Last Glacial Maximum

Peak of the last ice age, populations isolated

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup B

Cultural Heritage

These ancient cultures have been linked to haplogroup B based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Ancient Beringian Chinese Paleolithic Colonial Maya Huaca Prieta Kaingang Sambaqui Lapa do Santo Mesolithic British Tianyuan Culture Trail Creek Culture
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

75 subclade carriers of haplogroup B (no exact B samples sequenced yet)

50 / 50 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual I0045 from Peru, dated 100 CE - 650 CE
I0045
Peru Early Intermediate Period Lima Culture, Peru 1,450 Years Ago 100 CE - 650 CE Lima Culture B2 Downstream
Portrait of ancient individual IL3 from Peru, dated 140 CE - 338 CE
IL3
Peru Rio Uncallane, Peru 1,600 Years Ago 140 CE - 338 CE Rio Uncallane B2 Downstream
Portrait of ancient individual IL3 from Peru, dated 140 CE - 338 CE
IL3
Peru Pre-Columbian South America 140 CE - 338 CE B2 Downstream
Portrait of ancient individual I0974 from Peru, dated 200 CE - 700 CE
I0974
Peru Early Intermediate Period Lima Culture, Peru 1,450 Years Ago 200 CE - 700 CE Lima Culture B2 Downstream
Portrait of ancient individual E8CdV from Mexico, dated 540 CE - 660 CE
E8CdV
Mexico Mexico Guanajuato Medieval 540 CE - 660 CE Loma San Gabriel B2 Downstream
Portrait of ancient individual YCH057 from Mexico, dated 550 CE - 1200 CE
YCH057
Mexico Maya Lowland Classic 550 CE - 1200 CE Maya Classic B2 Downstream
Portrait of ancient individual YCH057 from Mexico, dated 550 CE - 1200 CE
YCH057
Mexico Maya Lowland Classic 550 CE - 1200 CE Maya Classic B2 Downstream
Portrait of ancient individual JBT019 from Brazil, dated 553 CE - 646 CE
JBT019
Brazil Sambaqui Culture of Jabuticabeira II 553 CE - 646 CE Jabuticabeira II Sambaqui B2 Downstream
Portrait of ancient individual I2558 from Peru, dated 585 CE - 675 CE
I2558
Peru Early Intermediate Period Ullujaya, Peru 1,350 Years Ago 585 CE - 675 CE Ullujaya Culture B2 Downstream
Portrait of ancient individual I0979 from Bolivia, dated 650 CE - 1000 CE
I0979
Bolivia Middle Horizon Tiwanaku, Bolivia 650 CE - 1000 CE Tiwanaku B2 Downstream
Chapter VI

Carrier Distribution Map

Geographic distribution of 75 ancient DNA samples (direct and subclade carriers of B)

Subclade carrier
Time Period Filter
All Time Periods
Showing all samples
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution by country of origin (direct and subclade carriers shown by default)

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods (direct and subclade carriers shown by default)

Data

Data & Provenance

Source information and data quality

Last Updated 2026-02-09
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.