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GWAS Study

Sequence variants in the PTCH1 gene associate with spine bone mineral density and osteoporotic fractures.

Styrkarsdottir U, Thorleifsson G, Gudjonsson SA et al.

26733130 PubMed ID
GWAS Study Type
30224 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

SU
Styrkarsdottir U
TG
Thorleifsson G
GS
Gudjonsson SA
SA
Sigurdsson A
CJ
Center JR
LS
Lee SH
NT
Nguyen TV
KT
Kwok TCY
LJ
Lee JSW
HS
Ho SC
WJ
Woo J
LP
Leung PC
KB
Kim BJ
RT
Rafnar T
KL
Kiemeney LA
IT
Ingvarsson T
KJ
Koh JM
TN
Tang NLS
EJ
Eisman JA
CC
Christiansen C
SG
Sigurdsson G
TU
Thorsteinsdottir U
SK
Stefansson K
Chapter II

Abstract

Summary of the research findings

Bone mineral density (BMD) is a measure of osteoporosis and is useful in evaluating the risk of fracture. In a genome-wide association study of BMD among 20,100 Icelanders, with follow-up in 10,091 subjects of European and East-Asian descent, we found a new BMD locus that harbours the PTCH1 gene, represented by rs28377268 (freq. 11.4-22.6%) that associates with reduced spine BMD (P=1.0 × 10(-11), β=-0.09). We also identified a new spine BMD signal in RSPO3, rs577721086 (freq. 6.8%), that associates with increased spine BMD (P=6.6 × 10(-10), β=0.14). Importantly, both variants associate with osteoporotic fractures and affect expression of the PTCH1 and RSPO3 genes that is in line with their influence on BMD and known biological function of these genes. Additional new BMD signals were also found at the AXIN1 and SOST loci and a new lead SNP at the EN1 locus.

up to 20,132 European ancestry individuals

Chapter III

Study Statistics

Key metrics and study information

30224
Total Participants
GWAS
Study Type
Yes
Replicated
10,092 European and East Asian ancestry individuals
Replication Participants
European, East Asian, European
Ancestry
Iceland
Recruitment Country
Chapter IV

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