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GWAS Study

Analysis combining correlated glaucoma traits identifies five new risk loci for open-angle glaucoma.

Gharahkhani P, Burdon KP, Cooke Bailey JN et al.

29449654 PubMed ID
GWAS Study Type
39649 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

GP
Gharahkhani P
BK
Burdon KP
CB
Cooke Bailey JN
HA
Hewitt AW
LM
Law MH
PL
Pasquale LR
KJ
Kang JH
HJ
Haines JL
SE
Souzeau E
ZT
Zhou T
SO
Siggs OM
LJ
Landers J
AM
Awadalla M
SS
Sharma S
MR
Mills RA
RB
Ridge B
LD
Lynn D
CR
Casson R
GS
Graham SL
GI
Goldberg I
WA
White A
HP
Healey PR
GJ
Grigg J
LM
Lawlor M
MP
Mitchell P
RJ
Ruddle J
CM
Coote M
WM
Walland M
BS
Best S
VA
Vincent A
GJ
Gale J
RG
RadfordSmith G
WD
Whiteman DC
MG
Montgomery GW
MN
Martin NG
MD
Mackey DA
WJ
Wiggs JL
MS
MacGregor S
CJ
Craig JE
Chapter II

Abstract

Summary of the research findings

Open-angle glaucoma (OAG) is a major cause of blindness worldwide. To identify new risk loci for OAG, we performed a genome-wide association study in 3,071 OAG cases and 6,750 unscreened controls, and meta-analysed the results with GWAS data for intraocular pressure (IOP) and optic disc parameters (the overall meta-analysis sample size varying between 32,000 to 48,000 participants), which are glaucoma-related traits. We identified and independently validated four novel genome-wide significant associations within or near MYOF and CYP26A1, LINC02052 and CRYGS, LMX1B, and LMO7 using single variant tests, one additional locus (C9) using gene-based tests, and two genetic pathways - "response to fluid shear stress" and "abnormal retina morphology" - in pathway-based tests. Interestingly, some of the new risk loci contribute to risk of other genetically-correlated eye diseases including myopia and age-related macular degeneration. To our knowledge, this study is the first integrative study to combine genetic data from OAG and its correlated traits to identify new risk variants and genetic pathways, highlighting the future potential of combining genetic data from genetically-correlated eye traits for the purpose of gene discovery and mapping.

3,071 European ancestry open-angle glaucoma cases, 6,750 European ancestry controls, 22,489 European ancestry individuals with optic disc data, 7,339 Asian ancestry individuals with optic disc data

Chapter III

Study Statistics

Key metrics and study information

39649
Total Participants
GWAS
Study Type
Yes
Replicated
3,853 cases, 33,480 controls
Replication Participants
European, Asian unspecified
Ancestry
Australia, New Zealand
Recruitment Country
Chapter IV

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