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A GWAS in Latin Americans identifies novel face shape loci, implicating VPS13B and a Denisovan introgressed region in facial variation.

Bonfante B, Faux P, Navarro N et al.

33547071 PubMed ID
GWAS Study Type
6169 Participants
192 Views
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

BB
Bonfante B
FP
Faux P
NN
Navarro N
MJ
Mendoza-Revilla J
DM
Dubied M
MC
Montillot C
WE
Wentworth E
PL
Poloni L
VC
Varón-González C
JP
Jones P
XZ
Xiong Z
FM
Fuentes-Guajardo M
PS
Palmal S
CJ
Chacón-Duque JC
HM
Hurtado M
VV
Villegas V
GV
Granja V
JC
Jaramillo C
AW
Arias W
BR
Barquera R
EP
Everardo-Martínez P
SM
Sánchez-Quinto M
GJ
Gómez-Valdés J
VH
Villamil-Ramírez H
SD
Silva de Cerqueira CC
HT
Hünemeier T
RV
Ramallo V
LF
Liu F
WS
Weinberg SM
SJ
Shaffer JR
SE
Stergiakouli E
HL
Howe LJ
HP
Hysi PG
ST
Spector TD
GR
Gonzalez-José R
SL
Schüler-Faccini L
BM
Bortolini MC
AV
Acuña-Alonzo V
CS
Canizales-Quinteros S
GC
Gallo C
PG
Poletti G
BG
Bedoya G
RF
Rothhammer F
TC
Thauvin-Robinet C
FL
Faivre L
CC
Costedoat C
BD
Balding D
CT
Cox T
KM
Kayser M
DL
Duplomb L
YB
Yalcin B
CJ
Cotney J
AK
Adhikari K
RA
Ruiz-Linares A
Chapter II

Abstract

Summary of the research findings

To characterize the genetic basis of facial features in Latin Americans, we performed a genome-wide association study (GWAS) of more than 6000 individuals using 59 landmark-based measurements from two-dimensional profile photographs and ~9,000,000 genotyped or imputed single-nucleotide polymorphisms. We detected significant association of 32 traits with at least 1 (and up to 6) of 32 different genomic regions, more than doubling the number of robustly associated face morphology loci reported until now (from 11 to 23). These GWAS hits are strongly enriched in regulatory sequences active specifically during craniofacial development. The associated region in 1p12 includes a tract of archaic adaptive introgression, with a Denisovan haplotype common in Native Americans affecting particularly lip thickness. Among the nine previously unidentified face morphology loci we identified is the VPS13B gene region, and we show that variants in this region also affect midfacial morphology in mice.

6,169 Latin American individuals

Chapter III

Study Statistics

Key metrics and study information

6169
Total Participants
GWAS
Study Type
No
Replicated
Hispanic or Latin American
Ancestry
Colombia, Brazil, Mexico, Chile, Peru
Recruitment Country
Chapter IV

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