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Research Publication

The complete genome sequence of a Neanderthal from the Altai Mountains

Prüfer K, Racimo F, Patterson N et al.

24352235 PubMed ID
45 Authors
01/02/2014 Published
35 Samples
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

PK
Prüfer K
RF
Racimo F
PN
Patterson N
JF
Jay F
SS
Sankararaman S
SS
Sawyer S
HA
Heinze A
RG
Renaud G
SP
Sudmant PH
DF
de Filippo C
LH
Li H
MS
Mallick S
DM
Dannemann M
FQ
Fu Q
KM
Kircher M
KM
Kuhlwilm M
LM
Lachmann M
MM
Meyer M
OM
Ongyerth M
SM
Siebauer M
TC
Theunert C
TA
Tandon A
MP
Moorjani P
PJ
Pickrell J
MJ
Mullikin JC
VS
Vohr SH
GR
Green RE
HI
Hellmann I
JP
Johnson PL
BH
Blanche H
CH
Cann H
KJ
Kitzman JO
SJ
Shendure J
EE
Eichler EE
LE
Lein ES
BT
Bakken TE
GL
Golovanova LV
DV
Doronichev VB
SM
Shunkov MV
DA
Derevianko AP
VB
Viola B
SM
Slatkin M
RD
Reich D
KJ
Kelso J
PS
Pääbo S
Chapter II

Abstract

Summary of the research findings

We present a high-quality genome sequence of a Neanderthal woman from Siberia. We show that her parents were related at the level of half-siblings and that mating among close relatives was common among her recent ancestors. We also sequenced the genome of a Neanderthal from the Caucasus to low coverage. An analysis of the relationships and population history of available archaic genomes and 25 present-day human genomes shows that several gene flow events occurred among Neanderthals, Denisovans and early modern humans, possibly including gene flow into Denisovans from an unknown archaic group. Thus, interbreeding, albeit of low magnitude, occurred among many hominin groups in the Late Pleistocene. In addition, the high-quality Neanderthal genome allows us to establish a definitive list of substitutions that became fixed in modern humans after their separation from the ancestors of Neanderthals and Denisovans.

Chapter III

Ancient DNA Samples

35 ancient DNA samples referenced in this publication

35 Samples
Sample ID Date/Era Country Locality Sex mtDNA Y-DNA
B_Australian-4 2000 CE Australia M
HGDP01015 0 Brazil M
HGDP01015 2000 CE Brazil M
HGDP01015 2000 CE Brazil M
HGDP01308 0 China M
HGDP00775 0 China M
HGDP01308 2000 CE China M
HGDP00775 2000 CE China M
HGDP01308 2000 CE China M
HGDP00775 2000 CE China M
HGDP00982 0 Congo M
HGDP00982 2000 CE Congo M
HGDP00982 2000 CE Congo M
HGDP00533 0 France M
HGDP00533 2000 CE France M
HGDP00533 2000 CE France M
HGDP01076 0 Italy Sardinia M
HGDP01076 2000 CE Italy M
HGDP01076 2000 CE Italy Sardinia M
mixe0007 2000 CE Mexico Tmazulapan. Oaxaca F
HGDP01036 0 Namibia M
HGDP01036 2000 CE Namibia M
HGDP01036 2000 CE Namibia M
HGDP00936 0 Nigeria M
HGDP00936 2000 CE Nigeria M
HGDP00936 2000 CE Nigeria M
HGDP00546 0 Papua New Guinea M
HGDP00546 2000 CE Papua New Guinea New Guinea. Iatmul and Kwoma societies of the Middle Sepik River region M
HGDP00546 2000 CE Papua New Guinea M
Altai 128050 BCE Russia Denisova Cave. Altai F ND1a
Altai 128050 BCE Russia Denisova Cave. Altai F ND1a
HGDP01286 0 Senegal M
HGDP01286 2000 CE Senegal M
HGDP01286 2000 CE Senegal M
DNK07 2000 CE South Sudan Aweil M
Chapter IV

Analysis

Comprehensive review of ancestry and genetic findings

Important Disclaimer: This review has been performed semi-automatically and is provided for informational purposes only. While we strive for accuracy, this analysis may contain errors, omissions, or misinterpretations of the original research. DNA Genics disclaims all liability for any inaccuracies, errors, or consequences arising from the use of this information. Users should independently verify all information and consult original research publications before making any decisions based on this content. This analysis is not intended as a substitute for professional scientific review or medical advice.

Summary

Key Findings

Ancestry Insights

Traits Analysis

Historical Context

Scientific Assessment