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GWAS Study

ABCC9 gene polymorphism is associated with hippocampal sclerosis of aging pathology.

Nelson PT, Estus S, Abner EL et al.

24770881 PubMed ID
GWAS Study Type
2666 Participants
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

NP
Nelson PT
ES
Estus S
AE
Abner EL
PI
Parikh I
MM
Malik M
NJ
Neltner JH
IE
Ighodaro E
WW
Wang WX
WB
Wilfred BR
WL
Wang LS
KW
Kukull WA
NK
Nandakumar K
FM
Farman ML
PW
Poon WW
CM
Corrada MM
KC
Kawas CH
CD
Cribbs DH
BD
Bennett DA
SJ
Schneider JA
LE
Larson EB
CP
Crane PK
VO
Valladares O
SF
Schmitt FA
KR
Kryscio RJ
JG
Jicha GA
SC
Smith CD
SS
Scheff SW
SJ
Sonnen JA
HJ
Haines JL
PM
Pericak-Vance MA
MR
Mayeux R
FL
Farrer LA
VE
Van Eldik LJ
HC
Horbinski C
GR
Green RC
GM
Gearing M
PL
Poon LW
KP
Kramer PL
WR
Woltjer RL
MT
Montine TJ
PA
Partch AB
RA
Rajic AJ
RK
Richmire K
MS
Monsell SE
SG
Schellenberg GD
FD
Fardo DW
Chapter II

Abstract

Summary of the research findings

Hippocampal sclerosis of aging (HS-Aging) is a high-morbidity brain disease in the elderly but risk factors are largely unknown. We report the first genome-wide association study (GWAS) with HS-Aging pathology as an endophenotype. In collaboration with the Alzheimer's Disease Genetics Consortium, data were analyzed from large autopsy cohorts: (#1) National Alzheimer's Coordinating Center (NACC); (#2) Rush University Religious Orders Study and Memory and Aging Project; (#3) Group Health Research Institute Adult Changes in Thought study; (#4) University of California at Irvine 90+ Study; and (#5) University of Kentucky Alzheimer's Disease Center. Altogether, 363 HS-Aging cases and 2,303 controls, all pathologically confirmed, provided statistical power to test for risk alleles with large effect size. A two-tier study design included GWAS from cohorts #1-3 (Stage I) to identify promising SNP candidates, followed by focused evaluation of particular SNPs in cohorts #4-5 (Stage II). Polymorphism in the ATP-binding cassette, sub-family C member 9 (ABCC9) gene, also known as sulfonylurea receptor 2, was associated with HS-Aging pathology. In the meta-analyzed Stage I GWAS, ABCC9 polymorphisms yielded the lowest p values, and factoring in the Stage II results, the meta-analyzed risk SNP (rs704178:G) attained genome-wide statistical significance (p = 1.4 × 10(-9)), with odds ratio (OR) of 2.13 (recessive mode of inheritance). For SNPs previously linked to hippocampal sclerosis, meta-analyses of Stage I results show OR = 1.16 for rs5848 (GRN) and OR = 1.22 rs1990622 (TMEM106B), with the risk alleles as previously described. Sulfonylureas, a widely prescribed drug class used to treat diabetes, also modify human ABCC9 protein function. A subsample of patients from the NACC database (n = 624) were identified who were older than age 85 at death with known drug history. Controlling for important confounders such as diabetes itself, exposure to a sulfonylurea drug was associated with risk for HS-Aging pathology (p = 0.03). Thus, we describe a novel and targetable dementia risk factor.

241 cases, 1,998 controls

Chapter III

Study Statistics

Key metrics and study information

2666
Total Participants
GWAS
Study Type
Yes
Replicated
122 cases, 305 controls
Replication Participants
U.S.
Recruitment Country
Chapter IV

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