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Y-DNA Haplogroup • Paternal Lineage

H2

Y-DNA Haplogroup H2

~45,000 years ago
South Asia
3 subclades
3 ancient samples
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Chapter I

The Story

The journey of Y-DNA haplogroup H2

Origins and Evolution

Y-DNA haplogroup H2 is a downstream branch of haplogroup H (M69), a major paternal lineage that is most strongly associated with the Indian subcontinent. Because H is one of the characteristic South Asian Y-chromosome lineages, H2 is most plausibly rooted in ancient South Asian population history, likely arising from the diversification of H after the initial spread of its ancestral lineage into the subcontinent.

The deeper time depth of haplogroup H suggests an origin in the late Paleolithic or early Holocene, with later branching and regional differentiation shaped by demographic expansion, founder effects, and long-term population structure. H2 itself is best interpreted as an intermediate subclade that helps connect broader H-lineage ancestry to more localized paternal histories.

Subclades

As an intermediate clade, H2 may include additional downstream branches that vary by study and phylogenetic resolution. In Y-DNA research, intermediate lineages such as H2 are important because they often bridge broader ancestral lineages and younger, regionally informative subclades. The exact internal structure can change as the Y-chromosome phylogeny is refined through new SNP discovery and sequencing studies.

Geographical Distribution

H2 is expected to be found primarily in South Asian populations, consistent with the distribution of the parent haplogroup H. It is most relevant in the Indian subcontinent, where H-lineage diversity is highest, and it may appear across a range of populations including caste, tribal, and regionally localized groups.

At lower frequencies, related H lineages are also reported in Central Asia, the Middle East, and in diaspora populations such as the Roma and other communities with historical South Asian ancestry or admixture. These occurrences are generally explained by historical migrations, mobility, and gene flow rather than by a primary origin outside South Asia.

Historical and Cultural Significance

Because haplogroup H is strongly associated with the Indian subcontinent, H2 is useful in studies of South Asian paternal ancestry, social structure, and regional demographic history. It may help illuminate patterns of endogamy, clan history, and population differentiation among Indian, Pakistani, Bangladeshi, Nepali, and Sri Lankan groups.

In broader population genetics, lineages like H2 are valuable for tracing the persistence of ancient South Asian male lineages through periods of agricultural expansion, urbanization, state formation, and later historical migrations. While specific archaeological culture assignments for H2 are not firmly established, the lineage is broadly compatible with long-term continuity and internal diversification within South Asia rather than a single well-defined migration event.

Conclusion

Y-DNA haplogroup H2 is an intermediate South Asian paternal lineage within haplogroup H that reflects the deep and complex demographic history of the Indian subcontinent. Its significance lies in its placement within a highly regionally structured lineage family, making it useful for understanding the fine-scale paternal ancestry of South Asian populations.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 H2 Current ~45,000 years ago 🦴 Paleolithic 45,000 years 3 7 3
2 H ~45,000 years ago 🦴 Paleolithic 45,000 years 4 285 42

Siblings (3)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

South Asia

Modern Distribution

The populations where Y-DNA haplogroup H2 is found include:

  1. South Asian populations, especially groups in India, Pakistan, Bangladesh, Nepal, and Sri Lanka
  2. Tribal and caste populations across the Indian subcontinent
  3. Some Central Asian and Middle Eastern populations at low frequencies
  4. Roma and related diaspora populations in parts of Europe and West Asia
  5. Populations with historical South Asian admixture in adjacent regions

Regional Presence

South Asia High
Western Europe Low
Central Asia Low
Southeast Asia Low
Near East / Anatolia Low
Western Asia Low
Eastern Europe Low
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~50k years ago

Upper Paleolithic

Advanced tool-making, art, and cultural explosion

~45k years ago

Haplogroup H2

Your Y-DNA haplogroup emerged in South Asia

South Asia
~20k years ago

Last Glacial Maximum

Peak of the last ice age, populations isolated

~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with Y-DNA haplogroup H2

Cultural Heritage

These ancient cultures have been linked to haplogroup H2 based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

Linear Pottery Culture Stentinello
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

3 subclade carriers of haplogroup H2 (no exact H2 samples sequenced yet)

3 / 3 samples
Portrait Sample Country Era Date Culture Y-DNA Match
Portrait of ancient individual atp002 from Spain, dated 2900 BCE - 2675 BCE
atp002
Spain Chalcolithic Spain 2900 BCE - 2675 BCE Los Millares H2-P96 Downstream
Portrait of ancient individual FLR009 from France, dated 3952 BCE - 3714 BCE
FLR009
France Neolithic Normandy, France 3952 BCE - 3714 BCE Normandy Neolithic H2* Downstream
Portrait of ancient individual FLR008 from France, dated 4334 BCE - 4060 BCE
FLR008
France Neolithic Normandy, France 4334 BCE - 4060 BCE Normandy Neolithic H2m2 Downstream
Chapter VI

Carrier Distribution Map

Geographic distribution of 3 ancient DNA samples (direct and subclade carriers of H2)

Subclade carrier
Time Period Filter
All Time Periods
Showing all samples
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution by country of origin (direct and subclade carriers shown by default)

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods (direct and subclade carriers shown by default)

Data

Data & Provenance

Source information and data quality

Last Updated 2026-06-17
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for YDNA haplogroup classification and data.