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GWAS Study

Integration of GWAS, QTLs and keratinocyte functional assays reveals molecular mechanisms of atopic dermatitis.

Oliva M, Sarkar MK, March ME et al.

40164604 PubMed ID
GWAS Study Type
658426 Participants
223 Views
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Chapter I

Publication Details

Comprehensive information about this research publication

Authors

OM
Oliva M
SM
Sarkar MK
MM
March ME
SA
Saeidian AH
MF
Mentch FD
HC
Hsieh CL
TF
Tang F
UR
Uppala R
PM
Patrick MT
LQ
Li Q
BR
Bogle R
KJ
Kahlenberg JM
WD
Watson D
GJ
Glessner JT
YL
Youssefian L
VH
Vahidnezhad H
TL
Tsoi LC
HH
Hakonarson H
GJ
Gudjonsson JE
SK
Smith KM
RB
Riley-Gillis B
Chapter II

Abstract

Summary of the research findings

Atopic dermatitis is a highly heritable and common inflammatory skin condition affecting children and adults worldwide. Multi-ancestry approaches to atopic dermatitis genetic association studies are poised to boost power to detect genetic signal and identify loci contributing to atopic dermatitis risk. Here, we present a multi-ancestry GWAS meta-analysis of twelve atopic dermatitis cohorts from five ancestral populations totaling 56,146 cases and 602,280 controls. We report 101 genomic loci associated with atopic dermatitis, including 16 loci that have not been previously associated with atopic dermatitis or eczema. Fine-mapping, QTL colocalization, and cell-type enrichment analyses identified genes and cell types implicated in atopic dermatitis pathophysiology. Functional analyses in keratinocytes provide evidence for genes that could play a role in atopic dermatitis through epidermal barrier function. Our study provides insights into the etiology of atopic dermatitis by harnessing multiple genetic and functional approaches to unveil the mechanisms by which atopic dermatitis-associated variants impact genes and cell types.

42,963 European ancestry cases, 408,472 European ancestry controls, 5,014 Asian ancestry cases, 171,135 Asian ancestry controls, 7,063 African ancestry cases, 15,879 African ancestry controls, 237 Hispanic or Latin American cases, 1,877 Hispanic or Latin American controls, 869 admixed ancestry cases, 4,917 admixed ancestry controls

Chapter III

Study Statistics

Key metrics and study information

658426
Total Participants
GWAS
Study Type
No
Replicated
European, Asian unspecified, African unspecified, Hispanic or Latin American, Other admixed ancestry
Ancestry
Sweden, Netherlands, U.S., Republic of Ireland, Norway, Finland, Denmark, U.K., Australia, Switzerland, Germany, Spain, Japan
Recruitment Country
Chapter IV

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