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mtDNA Haplogroup • Maternal Lineage

M13B

mtDNA Haplogroup M13B

~18,000 years ago
East / Northeast Asia
0 subclades
2 ancient samples
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Chapter I

The Story

The journey of mtDNA haplogroup M13B

Origins and Evolution

mtDNA haplogroup M13B is a downstream branch of the M13 lineage, itself part of macro-haplogroup M, which diversified after the initial modern human settlement of Asia. Based on the phylogenetic position of M13B as a subclade of M13A'B and comparative coalescent estimates for related M13 sublineages, a plausible time depth for M13B is in the Late Glacial to early Holocene (roughly ~18 kya, with uncertainty). Like many M-derived lineages, M13B likely formed as regional populations in East and Northeast Asia became partially isolated during Pleistocene climatic fluctuations and then expanded locally during the warmer, more stable conditions of the Holocene.

Subclades

M13B represents an intermediate branch within the M13 tree (the full internal structure of M13 is incompletely sampled in published databases). Its principal phylogenetic neighbors are the sister clades derived from M13A'B (e.g., M13A), and further downstream diversification may exist but requires additional full mitogenome sequencing from target populations to resolve. At present M13B should be considered an informative regional marker that helps connect the broader M13 parental node to more derived, population-specific lineages.

Geographical Distribution

Empirical sampling and reasonable phylogeographic inference place M13B primarily in Northeast and East Asia, with the highest representation reported in Japanese archipelago populations (including Ryukyu and some Hondo samples) and detectable, lower-frequency occurrences among some northern East Asian and island groups (Ainu, certain Tungusic/Mongolic-speaking and Siberian coastal groups). Low-frequency traces may also appear in adjacent parts of continental East Asia owing to gene flow and historic movements. Overall, the distribution pattern is consistent with an origin and long-term presence in the East Asian region with subsequent local differentiation.

Historical and Cultural Significance

Because M13 lineages (including M13B) are most frequent in populations associated archaeologically with Jomon-period hunter-gatherer contexts in the Japanese archipelago, they are often discussed in studies of prehistoric East Asian population structure, island colonization, and the genetic legacy of pre-agricultural groups. M13B likely contributed to the maternal substrate of later populations in Japan and neighboring areas and may appear at low levels in groups influenced by subsequent migrations (e.g., Yayoi agricultural expansions), reflecting admixture rather than primary demographic replacement.

Conclusion

M13B is an mtDNA lineage of East/Northeast Asian character, useful for reconstructing regional maternal histories in Japan and nearby Siberian/island populations. The haplogroup's relatively localized distribution and intermediate age make it a valuable target for more intensive mitogenome sequencing and ancient DNA sampling to clarify its internal structure, precise age, and contributions to prehistoric population events. Current inferences remain provisional and will benefit from broader population sampling and ancient genomics.

Key Points

  • Origins and Evolution
  • Subclades
  • Geographical Distribution
  • Historical and Cultural Significance
  • Conclusion
Chapter II

Tree & Relationships

Phylogenetic context and subclades

Evolution Path

This haplogroup's evolutionary journey from its earliest ancestor to the present.

Steps Haplogroup Age Estimate Archaeology Era Time Passed Immediate Descendants Tested Modern Descendants Ancient Connections
1 M13B Current ~18,000 years ago 🏹 Mesolithic 18,000 years 0 0 2
2 M13A'B — — — 2 1 0
3 M13 ~45,000 years ago 🦴 Paleolithic 45,000 years 2 7 0
4 M13'46'61 — — — 1 8 0
5 M ~60,000 years ago 🦴 Paleolithic 60,000 years 42 2,162 41
6 L3 ~70,000 years ago 🦴 Paleolithic 70,000 years 7 23,542 6
7 L3'4 — — — 2 23,581 0
8 L3'4'6 — — — 2 23,584 0
9 L2'3'4'6 — — — 2 24,475 0
10 L2'3'4'5'6'7 — — — 2 24,488 0
11 L1'2'3'4'5'6'7 — — — 2 24,903 0
12 L ~160,000 years ago 🦴 Paleolithic 160,000 years 2 25,205 5

Subclades (0)

Terminal branch - no known subclades

Siblings (1)

Other branches from the same parent haplogroup

Chapter III

Where in the World

Geographic distribution and modern presence

Place of Origin

East / Northeast Asia

Modern Distribution

The populations where mtDNA haplogroup M13B is found include:

  1. Japanese (including some Ryukyu and Hondo samples)
  2. Ainu (northern Japan)
  3. Ryukyuan islanders
  4. Northeastern Siberian coastal and island groups (occasional)
  5. Tungusic- and Mongolic-speaking populations (low frequency)
  6. Nearby East Asian mainland populations (trace/low frequency)
CHAPTER IV

When in Time

Your haplogroup in the context of human history

~20k years ago

Last Glacial Maximum

Peak of the last ice age, populations isolated

~18k years ago

Haplogroup M13B

Your mtDNA haplogroup emerged in East / Northeast Asia

East / Northeast Asia
~10k years ago

Neolithic Revolution

Agriculture begins, settled communities form

~5k years ago

Bronze Age

Metalworking, writing, and early civilizations

~3k years ago

Iron Age

Iron tools, expanded trade networks

~2k years ago

Classical Antiquity

Greek and Roman civilizations flourish

Present

Present Day

Modern era

Your Haplogroup
Historical Era
Chapter IV-B

Linked Cultures

Ancient cultures associated with mtDNA haplogroup M13B

Cultural Heritage

These ancient cultures have been linked to haplogroup M13B based on matching ancient DNA samples from archaeological excavations. The presence of this haplogroup in these cultures provides insights into the migrations and population movements of populations carrying this haplogroup.

British Neolithic Goyet Cave Gravettian Iberomaurusian Indonesian Hunter-Gatherer Culture Malaysian Neolithic Ostuni Culture Spanish Gravettian Vietnamese Neolithic
Culture assignments are based on archaeological context of ancient DNA samples and may represent regional associations during specific time periods.
Chapter V

Sample Catalog

2 direct carriers of haplogroup M13B

2 / 2 samples
Portrait Sample Country Era Date Culture mtDNA Match
Portrait of ancient individual I1859 from Vietnam, dated 1889 BCE - 1742 BCE
I1859
Vietnam Neolithic Vietnam 1889 BCE - 1742 BCE Vietnamese Neolithic M13b Direct
Portrait of ancient individual I1859 from Vietnam, dated 1889 BCE - 1742 BCE
I1859
Vietnam Neolithic Vietnam 1889 BCE - 1742 BCE Vietnamese Neolithic M13b Direct
Chapter VI

Carrier Distribution Map

Geographic distribution of 2 ancient DNA samples (direct and subclade carriers of M13B)

Direct carrier
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Showing all samples
Chapter VII

Temporal Distribution

Distribution of carriers across archaeological periods

Chapter VIII

Geographic Distribution

Distribution by country of origin (direct and subclade carriers shown by default)

Chapter IX

Country × Era Distribution

Cross-tabulation of carrier countries and archaeological periods (direct and subclade carriers shown by default)

Data

Data & Provenance

Source information and data quality

Last Updated 2026-06-14
Confidence Score 50/100
Coverage Low
Data Source

We use the latest phylotree for MTDNA haplogroup classification and data.